Download Data

Complete PIASOmarkerDB Dataset

Download the entire PIASOmarkerDB dataset as a CSV (Comma Separated Values) file. This includes all cell types, genes, specificity scores, and study publications currently in the database.

Invitation Code Required: You will need a valid invitation code to download data. If you don't have one, please contact us.

Filename: PIASOmarkerDB_all_data_[date].csv

Programmatic Access (API)

For programmatic access to the database, you can use our RESTful API or Python client library.

Python Client Example:
from piasomarkerdb import PIASOmarkerDBClient

client = PIASOmarkerDBClient()

# Get markers as DataFrame
df = client.get_markers_df(
    cell_type="T-cell",
    min_score=0.5
)

print(df.head())
Direct API Example:
import requests

response = requests.get(
    "https://piasomarkerdb.org/api/v1/markers",
    params={"gene": "CD3E", "limit": 100}
)
data = response.json()

See the FAQ for detailed API documentation.

Data Usage Guidelines
  • Please cite PIASOmarkerDB when using the data in publications
  • For large-scale computational analyses, consider using the API
  • Contact us if you need bulk access or have special requirements
Need an Invitation Code?

To request an invitation code for downloading data, please contact:

Min Dai
dai@broadinstitute.org