Tutorials

• Introduction
• GDR: marker Gene-guided Dimensionality Reduction
• Pre-processing CellRanger outputs (single sample, Human PBMCs)
• Pre-processing CellRanger outputs (multiple samples, Human PBMCs)
• Pre-processing CellRanger outputs (single sample, mouse brain)
• Pre-processing CellRanger outputs (multiple samples, mouse brain)
• Running INFOG and GDR on one million cells
• Running GDR on mouse pancreatic endocrinogenesis data
• Running GDR on scATAC-seq data
• Running GDR on MNIST image data
• Running GDR on FashionMNIST image data (COSG for feature selection in pixels)
• Cell type prediction based on marker genes from reference dataset
• Cell type prediction by GDR
• Python client and API for accessing PIASOmarkerDB
• Running SCALAR on human cortex snRNA-seq data for ligand-receptor interaction analysis
• Finer clustering on selected cluster(s)
• Plotting functions in PIASO
• Built-in color palettes in PIASO
• Miscellaneous setup