API

• piaso package
  • Subpackages
    • piaso.plotting package
      • plot_embeddings_split()
      • plotEmbeddingsSplit()
      • plot_features_violin()
      • plotLigandReceptorInteraction()
      • plotLigandReceptorLollipop()
      • plotConfusionMatrix()
    • piaso.preprocessing package
      • getCrossCategories()
      • table()
      • rotateSpatialCoordinates()
    • piaso.tools package
      • runSVD()
      • runSVDLazy()
      • runGDR()
      • calculateScoreParallel()
      • calculateScoreParallel_multiBatch()
      • runGDRParallel()
      • runCOSGParallel()
      • leiden_local()
      • infog()
      • score()
      • predictCellTypeByGDR()
      • smoothCellTypePrediction()
      • predictCellTypeByMarker()
      • stitchSpace()
      • runSCALAR()
      • queryPIASOmarkerDB()
      • getMarkers()
      • analyzeMarkers()
      • PIASOmarkerDB()