API reference

These pages are generated from the installed package rather than written by hand, so a signature here is a signature you can call.

module	what lives there
piaso.pp	reading data, cell metrics, filtering, doublets
piaso.tl	normalization, dimensionality reduction, clustering, annotation
piaso.pl	embeddings, dot plots, violins, scatter
piaso.data	example datasets, genome references, motif databases

Two other packages carry their own reference:

• COSG — marker gene identification: cosg.cosg, used throughout the tutorials;
• cytome — the file format and its Python and R readers.

Functions that have moved to cytorete are listed by name at the bottom of the page they used to live on.