Citing PIASO

If PIASO is useful for your research, please cite:

Wu, S.J., Dai, M. et al. Pyramidal neurons proportionately alter cortical interneuron subtypes. Nature (2026). doi:10.1038/s41586-025-09996-8

Methods within PIASO

Several components have their own references — please cite the one you used.

component	reference
COSG — marker gene identification	Dai, M. et al. Briefings in Bioinformatics 23, bbac157 (2022)

Marker sets from PIASOmarkerDB carry the reference for the study they came from; cite that study, which the database reports alongside the markers.

Example datasets

The datasets used in the tutorials are redistributed from their original sources; cite the original publication rather than PIASO:

dataset	reference
SEA-AD MTG	Gabitto, M.I. et al. Nat Neurosci 27, 2366–2383 (2024)
Adult mouse cortex multiome	Bravo González-Blas, C. et al. Nat Methods 20, 1355–1367 (2023)
Human PBMC snMultiome (SAN1/SAN2)	De Rop, F.V. et al. Nat Biotechnol 42, 916–926 (2024)
10x mouse brain / E18 neurons	10x Genomics public datasets

All are archived together at Zenodo record 19699639.

License

PIASO is released under the BSD-3-Clause license.